Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | X | Z A add_cls_token() (concept.ContrastiveModel method) add_module() (concept.ContrastiveModel method) all_gather() (concept.ContrastiveModel method) all_gather_concat() (concept.ContrastiveModel method) apply() (concept.ContrastiveModel method) apply_compatibility_changes() (concept.scConcept static method) automatic_optimization (concept.ContrastiveModel attribute) B backward() (concept.ContrastiveModel method) bfloat16() (concept.ContrastiveModel method) buffers() (concept.ContrastiveModel method) C call_super_init (concept.ContrastiveModel attribute) CHECKPOINT_HYPER_PARAMS_KEY (concept.ContrastiveModel attribute) CHECKPOINT_HYPER_PARAMS_NAME (concept.ContrastiveModel attribute) CHECKPOINT_HYPER_PARAMS_TYPE (concept.ContrastiveModel attribute) children() (concept.ContrastiveModel method) clip_gradients() (concept.ContrastiveModel method) compile() (concept.ContrastiveModel method) configure_callbacks() (concept.ContrastiveModel method) configure_gradient_clipping() (concept.ContrastiveModel method) configure_model() (concept.ContrastiveModel method) configure_optimizers() (concept.ContrastiveModel method) configure_sharded_model() (concept.ContrastiveModel method) ContrastiveModel (class in concept) cpu() (concept.ContrastiveModel method) cuda() (concept.ContrastiveModel method) current_epoch (concept.ContrastiveModel attribute) D device (concept.ContrastiveModel attribute) device_mesh (concept.ContrastiveModel attribute) double() (concept.ContrastiveModel method) dtype (concept.ContrastiveModel attribute) dump_patches (concept.ContrastiveModel attribute) E estimate_mutual_information() (concept.scConcept method) eval() (concept.ContrastiveModel method) example_input_array (concept.ContrastiveModel attribute) extra_repr() (concept.ContrastiveModel method) extract_embeddings() (concept.scConcept method) F fabric (concept.ContrastiveModel attribute) float() (concept.ContrastiveModel method) forward() (concept.ContrastiveModel method) forward_pair() (concept.ContrastiveModel method) freeze() (concept.ContrastiveModel method) G get_buffer() (concept.ContrastiveModel method) get_extra_state() (concept.ContrastiveModel method) get_gene_name_to_id_mapping() (concept.scConcept method) get_parameter() (concept.ContrastiveModel method) get_submodule() (concept.ContrastiveModel method) global_rank (concept.ContrastiveModel attribute) global_step (concept.ContrastiveModel attribute) H half() (concept.ContrastiveModel method) hparams (concept.ContrastiveModel attribute) hparams_initial (concept.ContrastiveModel attribute) I ipu() (concept.ContrastiveModel method) L load_config() (concept.scConcept static method) load_config_and_model() (concept.scConcept method) load_from_checkpoint() (concept.ContrastiveModel method) load_state_dict() (concept.ContrastiveModel method) local_rank (concept.ContrastiveModel attribute) log() (concept.ContrastiveModel method) log_dict() (concept.ContrastiveModel method) log_metric() (concept.ContrastiveModel method) log_metrics_dict() (concept.ContrastiveModel method) logger (concept.ContrastiveModel attribute) loggers (concept.ContrastiveModel attribute) lr_scheduler_step() (concept.ContrastiveModel method) lr_schedulers() (concept.ContrastiveModel method) M manual_backward() (concept.ContrastiveModel method) map_gene_names_to_ids() (concept.scConcept method) mask_values() (concept.ContrastiveModel method) modules() (concept.ContrastiveModel method) mtia() (concept.ContrastiveModel method) N named_buffers() (concept.ContrastiveModel method) named_children() (concept.ContrastiveModel method) named_modules() (concept.ContrastiveModel method) named_parameters() (concept.ContrastiveModel method) O on_after_backward() (concept.ContrastiveModel method) on_after_batch_transfer() (concept.ContrastiveModel method) on_before_backward() (concept.ContrastiveModel method) on_before_batch_transfer() (concept.ContrastiveModel method) on_before_optimizer_step() (concept.ContrastiveModel method) on_before_zero_grad() (concept.ContrastiveModel method) on_fit_end() (concept.ContrastiveModel method) on_fit_start() (concept.ContrastiveModel method) on_gpu (concept.ContrastiveModel attribute) on_load_checkpoint() (concept.ContrastiveModel method) on_predict_batch_end() (concept.ContrastiveModel method) on_predict_batch_start() (concept.ContrastiveModel method) on_predict_end() (concept.ContrastiveModel method) on_predict_epoch_end() (concept.ContrastiveModel method) on_predict_epoch_start() (concept.ContrastiveModel method) on_predict_model_eval() (concept.ContrastiveModel method) on_predict_start() (concept.ContrastiveModel method) on_save_checkpoint() (concept.ContrastiveModel method) on_test_batch_end() (concept.ContrastiveModel method) on_test_batch_start() (concept.ContrastiveModel method) on_test_end() (concept.ContrastiveModel method) on_test_epoch_end() (concept.ContrastiveModel method) on_test_epoch_start() (concept.ContrastiveModel method) on_test_model_eval() (concept.ContrastiveModel method) on_test_model_train() (concept.ContrastiveModel method) on_test_start() (concept.ContrastiveModel method) on_train_batch_end() (concept.ContrastiveModel method) on_train_batch_start() (concept.ContrastiveModel method) on_train_end() (concept.ContrastiveModel method) on_train_epoch_end() (concept.ContrastiveModel method) on_train_epoch_start() (concept.ContrastiveModel method) on_train_start() (concept.ContrastiveModel method) on_validation_batch_end() (concept.ContrastiveModel method) on_validation_batch_start() (concept.ContrastiveModel method) on_validation_end() (concept.ContrastiveModel method) on_validation_epoch_end() (concept.ContrastiveModel method) on_validation_epoch_start() (concept.ContrastiveModel method) on_validation_model_eval() (concept.ContrastiveModel method) on_validation_model_train() (concept.ContrastiveModel method) on_validation_model_zero_grad() (concept.ContrastiveModel method) on_validation_start() (concept.ContrastiveModel method) optimizer_step() (concept.ContrastiveModel method) optimizer_zero_grad() (concept.ContrastiveModel method) optimizers() (concept.ContrastiveModel method) P pad_tensor() (concept.ContrastiveModel method) parameters() (concept.ContrastiveModel method) predict_dataloader() (concept.ContrastiveModel method) predict_step() (concept.ContrastiveModel method) prepare_data() (concept.ContrastiveModel method) print() (concept.ContrastiveModel method) R register_backward_hook() (concept.ContrastiveModel method) register_buffer() (concept.ContrastiveModel method) register_forward_hook() (concept.ContrastiveModel method) register_forward_pre_hook() (concept.ContrastiveModel method) register_full_backward_hook() (concept.ContrastiveModel method) register_full_backward_pre_hook() (concept.ContrastiveModel method) register_load_state_dict_post_hook() (concept.ContrastiveModel method) register_load_state_dict_pre_hook() (concept.ContrastiveModel method) register_module() (concept.ContrastiveModel method) register_parameter() (concept.ContrastiveModel method) register_state_dict_post_hook() (concept.ContrastiveModel method) register_state_dict_pre_hook() (concept.ContrastiveModel method) remove_ignored_hparams() (concept.ContrastiveModel method) requires_grad_() (concept.ContrastiveModel method) S save_hyperparameters() (concept.ContrastiveModel method) scConcept (class in concept) set_active_species() (concept.ContrastiveModel method) set_extra_state() (concept.ContrastiveModel method) set_submodule() (concept.ContrastiveModel method) setup() (concept.ContrastiveModel method) share_memory() (concept.ContrastiveModel method) species (concept.scConcept attribute) state_dict() (concept.ContrastiveModel method) strict_loading (concept.ContrastiveModel attribute) T T_destination (concept.ContrastiveModel attribute) teardown() (concept.ContrastiveModel method) test_dataloader() (concept.ContrastiveModel method) test_step() (concept.ContrastiveModel method) to() (concept.ContrastiveModel method) to_empty() (concept.ContrastiveModel method) to_onnx() (concept.ContrastiveModel method) to_tensorrt() (concept.ContrastiveModel method) to_torchscript() (concept.ContrastiveModel method) toggle_optimizer() (concept.ContrastiveModel method) toggled_optimizer() (concept.ContrastiveModel method) train() (concept.ContrastiveModel method) (concept.scConcept method) train_dataloader() (concept.ContrastiveModel method) trainer (concept.ContrastiveModel attribute) training (concept.ContrastiveModel attribute) training_step() (concept.ContrastiveModel method) transfer_batch_to_device() (concept.ContrastiveModel method) type() (concept.ContrastiveModel method) U unfreeze() (concept.ContrastiveModel method) untoggle_optimizer() (concept.ContrastiveModel method) V val_dataloader() (concept.ContrastiveModel method) validate_config() (concept.scConcept static method) validation_step() (concept.ContrastiveModel method) X xpu() (concept.ContrastiveModel method) Z zero_grad() (concept.ContrastiveModel method)